Human Gene PHF19 (ENST00000419155.5) Description and Page Index
  Description: Homo sapiens PHD finger protein 19 (PHF19), transcript variant 6, non-coding RNA. (from RefSeq NR_104601)
Gencode Transcript: ENST00000419155.5
Gencode Gene: ENSG00000119403.15
Transcript (Including UTRs)
   Position: hg38 chr9:120,855,652-120,868,911 Size: 13,260 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr9:120,857,944-120,866,952 Size: 9,009 Coding Exon Count: 9 

Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:120,855,652-120,868,911)mRNA (may differ from genome)Protein (371 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsHGNC
LynxMGIOMIMPubMedStanford SOURCEUniProtKB

-  MalaCards Disease Associations
  MalaCards Gene Search: PHF19
Diseases sorted by gene-association score: cataract 7 (6), leukoencephalopathy with vanishing white matter (4), melanoma (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.25 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 328.13 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.60117-0.509 Picture PostScript Text
3' UTR -906.702292-0.396 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR025894 - Mtf2_C_dom
IPR011011 - Znf_FYVE_PHD
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF14061 - Polycomb-like MTF2 factor 2

ModBase Predicted Comparative 3D Structure on F5H8K3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BX640713 - Homo sapiens mRNA; cDNA DKFZp686C07187 (from clone DKFZp686C07187).
AK122744 - Homo sapiens cDNA FLJ16269 fis, clone MESAN2016552, highly similar to Homo sapiens PHD finger protein 19 (PHF19), transcript variant 1, mRNA.
BC044224 - Homo sapiens PHD finger protein 19, mRNA (cDNA clone IMAGE:5729468), containing frame-shift errors.
AL117477 - Homo sapiens mRNA; cDNA DKFZp727G051 (from clone DKFZp727G051); partial cds.
JD264851 - Sequence 245875 from Patent EP1572962.
JD324947 - Sequence 305971 from Patent EP1572962.
JD527102 - Sequence 508126 from Patent EP1572962.
JD240182 - Sequence 221206 from Patent EP1572962.
JD126415 - Sequence 107439 from Patent EP1572962.
JD509697 - Sequence 490721 from Patent EP1572962.
JD289699 - Sequence 270723 from Patent EP1572962.
JD045601 - Sequence 26625 from Patent EP1572962.
JD318424 - Sequence 299448 from Patent EP1572962.
JD098636 - Sequence 79660 from Patent EP1572962.
JD248742 - Sequence 229766 from Patent EP1572962.
JD281780 - Sequence 262804 from Patent EP1572962.
JD077467 - Sequence 58491 from Patent EP1572962.
JD477308 - Sequence 458332 from Patent EP1572962.
JD134760 - Sequence 115784 from Patent EP1572962.
JD159600 - Sequence 140624 from Patent EP1572962.
JD424325 - Sequence 405349 from Patent EP1572962.
JD095712 - Sequence 76736 from Patent EP1572962.
JD356085 - Sequence 337109 from Patent EP1572962.
JD215033 - Sequence 196057 from Patent EP1572962.
JD446171 - Sequence 427195 from Patent EP1572962.
JD173736 - Sequence 154760 from Patent EP1572962.
JD163340 - Sequence 144364 from Patent EP1572962.
JD040699 - Sequence 21723 from Patent EP1572962.
JD094941 - Sequence 75965 from Patent EP1572962.
JD301306 - Sequence 282330 from Patent EP1572962.
JD457760 - Sequence 438784 from Patent EP1572962.
JD503182 - Sequence 484206 from Patent EP1572962.
JD150408 - Sequence 131432 from Patent EP1572962.
JD152730 - Sequence 133754 from Patent EP1572962.
JD189076 - Sequence 170100 from Patent EP1572962.
JD334293 - Sequence 315317 from Patent EP1572962.
JD312407 - Sequence 293431 from Patent EP1572962.
JD121326 - Sequence 102350 from Patent EP1572962.
JD075207 - Sequence 56231 from Patent EP1572962.
JD313364 - Sequence 294388 from Patent EP1572962.
JD103030 - Sequence 84054 from Patent EP1572962.
JD050766 - Sequence 31790 from Patent EP1572962.
JD103225 - Sequence 84249 from Patent EP1572962.
JD320674 - Sequence 301698 from Patent EP1572962.
JD103224 - Sequence 84248 from Patent EP1572962.
JD111499 - Sequence 92523 from Patent EP1572962.
JD223325 - Sequence 204349 from Patent EP1572962.
JD147825 - Sequence 128849 from Patent EP1572962.
JD175404 - Sequence 156428 from Patent EP1572962.
JD248014 - Sequence 229038 from Patent EP1572962.
JD163327 - Sequence 144351 from Patent EP1572962.
JD334906 - Sequence 315930 from Patent EP1572962.
JD439762 - Sequence 420786 from Patent EP1572962.
AK303433 - Homo sapiens cDNA FLJ53261 complete cds, highly similar to Homo sapiens PHD finger protein 19 (PHF19), transcript variant 1, mRNA.
JD549880 - Sequence 530904 from Patent EP1572962.
JD124078 - Sequence 105102 from Patent EP1572962.
BC125076 - Homo sapiens PHD finger protein 19, mRNA (cDNA clone MGC:149712 IMAGE:40117657), complete cds.
BC125077 - Homo sapiens PHD finger protein 19, mRNA (cDNA clone MGC:149713 IMAGE:40117658), complete cds.
AK302996 - Homo sapiens cDNA FLJ55009 complete cds, highly similar to Homo sapiens PHD finger protein 19 (PHF19), transcript variant 1, mRNA.
JD140934 - Sequence 121958 from Patent EP1572962.
JD365672 - Sequence 346696 from Patent EP1572962.
JD194010 - Sequence 175034 from Patent EP1572962.
JD048995 - Sequence 30019 from Patent EP1572962.
JD063304 - Sequence 44328 from Patent EP1572962.
JD537135 - Sequence 518159 from Patent EP1572962.
JD065303 - Sequence 46327 from Patent EP1572962.
JD426442 - Sequence 407466 from Patent EP1572962.
JD383959 - Sequence 364983 from Patent EP1572962.
JD426441 - Sequence 407465 from Patent EP1572962.
JD480336 - Sequence 461360 from Patent EP1572962.
JD241966 - Sequence 222990 from Patent EP1572962.
JD286228 - Sequence 267252 from Patent EP1572962.
KJ893530 - Synthetic construct Homo sapiens clone ccsbBroadEn_02924 PHF19 gene, encodes complete protein.
AB527540 - Synthetic construct DNA, clone: pF1KB6107, Homo sapiens PHF19 gene for PHD finger protein 19, without stop codon, in Flexi system.

-  Other Names for This Gene
  Alternate Gene Symbols: F5H8K3, F5H8K3_HUMAN, NR_104601, uc011lyf.1, uc011lyf.2, uc011lyf.3
UCSC ID: uc011lyf.3
RefSeq Accession: NM_001286842
Protein: F5H8K3 CCDS: CCDS69648.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.