Human Gene ANKRD30BL (ENST00000409867.5) Description and Page Index
  Description: Homo sapiens ankyrin repeat domain 30B like (ANKRD30BL), transcript variant 3, mRNA. (from RefSeq NM_001358416)
Gencode Transcript: ENST00000409867.5
Gencode Gene: ENSG00000163046.15
Transcript (Including UTRs)
   Position: hg38 chr2:132,147,907-132,161,955 Size: 14,049 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg38 chr2:132,148,131-132,161,705 Size: 13,575 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsRNA-Seq ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:132,147,907-132,161,955)mRNA (may differ from genome)Protein (258 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIneXtProtPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: A30BL_HUMAN
DESCRIPTION: RecName: Full=Putative ankyrin repeat domain-containing protein 30B-like;
SIMILARITY: Contains 4 ANK repeats.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.98 RPKM in Testis
Total median expression: 13.64 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.90250-0.388 Picture PostScript Text
3' UTR -31.10224-0.139 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom

Pfam Domains:
PF12796 - Ankyrin repeats (3 copies)

ModBase Predicted Comparative 3D Structure on A7E2S9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC045801 - Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:4814810).
BC029821 - Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.
BC057764 - Homo sapiens hypothetical protein LOC554226, mRNA (cDNA clone IMAGE:4831280).
JD358078 - Sequence 339102 from Patent EP1572962.
JD495201 - Sequence 476225 from Patent EP1572962.
JD081073 - Sequence 62097 from Patent EP1572962.
JD260093 - Sequence 241117 from Patent EP1572962.
BC150521 - Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:40132779).
JD362091 - Sequence 343115 from Patent EP1572962.
JD354087 - Sequence 335111 from Patent EP1572962.
DQ586880 - Homo sapiens piRNA piR-53992, complete sequence.
JD424813 - Sequence 405837 from Patent EP1572962.
JD281282 - Sequence 262306 from Patent EP1572962.
JD483692 - Sequence 464716 from Patent EP1572962.
JD477947 - Sequence 458971 from Patent EP1572962.
JD378995 - Sequence 360019 from Patent EP1572962.
JD461130 - Sequence 442154 from Patent EP1572962.
JD537840 - Sequence 518864 from Patent EP1572962.
JD222089 - Sequence 203113 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A30BL_HUMAN, A7E2S9, B8ZZL7, NCRNA00164, NM_001358416, uc061nxe.1
UCSC ID: uc061nxe.1
RefSeq Accession: NM_001358416
Protein: A7E2S9 (aka A30BL_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.