Human Gene RNF32 (ENST00000405335.5) Description and Page Index
  Description: May play a role in sperm formation. (from UniProt Q9H0A6)
RefSeq Summary (NM_001184996): The protein encoded by this gene contains two RING ring finger motifs. RING finger motifs are present in a variety of functionally distinct proteins and are known to be involved in protein-DNA or protein-protein interactions. This gene was found to be expressed during spermatogenesis, most likely in spermatocytes and/or in spermatids. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Apr 2015].
Gencode Transcript: ENST00000405335.5
Gencode Gene: ENSG00000105982.16
Transcript (Including UTRs)
   Position: hg38 chr7:156,640,784-156,677,095 Size: 36,312 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg38 chr7:156,643,878-156,676,655 Size: 32,778 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsMalaCardsCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:156,640,784-156,677,095)mRNA (may differ from genome)Protein (362 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCHPRD
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Wikipedia

-  Comments and Description Text from UniProtKB
  ID: RNF32_HUMAN
DESCRIPTION: RecName: Full=RING finger protein 32;
FUNCTION: May play a role in sperm formation.
INTERACTION: Q9NXK8:FBXL12; NbExp=2; IntAct=EBI-724829, EBI-719790; Q96QH2:PRAM1; NbExp=2; IntAct=EBI-724829, EBI-2860740; Q96FJ0:STAMBPL1; NbExp=2; IntAct=EBI-724829, EBI-745021;
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Highly expressed in testis, less abundant in ovary.
SIMILARITY: Contains 1 IQ domain.
SIMILARITY: Contains 2 RING-type zinc fingers.

-  MalaCards Disease Associations
  MalaCards Gene Search: RNF32
Diseases sorted by gene-association score: triphalangeal thumb (8)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.06 RPKM in Testis
Total median expression: 41.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -140.80409-0.344 Picture PostScript Text
3' UTR -77.60440-0.176 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000048 - IQ_motif_EF-hand-BS
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00612 - IQ calmodulin-binding motif
PF13639 - Ring finger domain

ModBase Predicted Comparative 3D Structure on Q9H0A6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0046872 metal ion binding

Cellular Component:
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0016235 aggresome


-  Descriptions from all associated GenBank mRNAs
  AK314067 - Homo sapiens cDNA, FLJ94733.
AL136874 - Homo sapiens mRNA; cDNA DKFZp434C135 (from clone DKFZp434C135).
JD289179 - Sequence 270203 from Patent EP1572962.
BC028120 - Homo sapiens ring finger protein 32, mRNA (cDNA clone IMAGE:5171854), containing frame-shift errors.
AK307316 - Homo sapiens cDNA, FLJ97264.
AF325690 - Homo sapiens FKSG33 (FKSG33) mRNA, complete cds.
BC015416 - Homo sapiens ring finger protein 32, mRNA (cDNA clone MGC:21976 IMAGE:4395421), complete cds.
AF441222 - Homo sapiens ring finger protein RNF32 (RNF32) mRNA, complete cds; alternatively spliced.
AF441224 - Homo sapiens truncated ring finger protein RNF32 (RNF32) mRNA, complete cds, alternatively spliced.
JD062991 - Sequence 44015 from Patent EP1572962.
AY251165 - Homo sapiens HSD15 mRNA, complete cds.
AB463236 - Synthetic construct DNA, clone: pF1KB8666, Homo sapiens RNF32 gene for ring finger protein 32, without stop codon, in Flexi system.
CU677305 - Synthetic construct Homo sapiens gateway clone IMAGE:100018595 5' read RNF32 mRNA.
KJ903807 - Synthetic construct Homo sapiens clone ccsbBroadEn_13201 RNF32 gene, encodes complete protein.
CU688400 - Synthetic construct Homo sapiens gateway clone IMAGE:100018624 5' read RNF32 mRNA.
KJ904992 - Synthetic construct Homo sapiens clone ccsbBroadEn_14386 RNF32 gene, encodes complete protein.
AM392762 - Synthetic construct Homo sapiens clone IMAGE:100001716 for hypothetical protein (RNF32 gene).
AM393194 - Synthetic construct Homo sapiens clone IMAGE:100001759 for hypothetical protein (RNF32 gene).
BT007037 - Homo sapiens ring finger protein 32 mRNA, complete cds.
CR533513 - Homo sapiens full open reading frame cDNA clone RZPDo834A1019D for gene RNF32, ring finger protein 32; complete cds, incl. stopcodon.
JD224629 - Sequence 205653 from Patent EP1572962.
JD058747 - Sequence 39771 from Patent EP1572962.
JD280174 - Sequence 261198 from Patent EP1572962.
JD226936 - Sequence 207960 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC028120, FKSG33, HSD15, Q6FIB3, Q6X7T4, Q8N6V8, Q8TDG0, Q96BM5, Q9H0A6, Q9Y6U1, RNF32_HUMAN, uc064jpz.1
UCSC ID: uc064jpz.1
RefSeq Accession: NM_001184996
Protein: Q9H0A6 (aka RNF32_HUMAN)
CCDS: CCDS5944.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.