Human Gene ZNF133 (uc010gcs.3)
Description: Homo sapiens zinc finger protein 133 (ZNF133), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr20:18,269,121-18,297,640 Size: 28,520 Total Exon Count: 4 Strand: +
Coding Region
Position: hg19 chr20:18,286,331-18,297,460 Size: 11,130 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF00096 - Zinc finger, C2H2 type
PF01352 - KRAB box
PF13912 - C2H2-type zinc finger
SCOP Domains: 48695 - Multiheme cytochromes
109640 - KRAB domain (Kruppel-associated box, Pfam 01352)
57667 - C2H2 and C2HC zinc fingers
ModBase Predicted Comparative 3D Structure on P52736-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BC001887 - Homo sapiens zinc finger protein 133, mRNA (cDNA clone MGC:1579 IMAGE:3535533), complete cds.AK295273 - Homo sapiens cDNA FLJ56079 complete cds, highly similar to Zinc finger protein 133.AK295513 - Homo sapiens cDNA FLJ61274 complete cds, highly similar to Zinc finger protein 133.AK291389 - Homo sapiens cDNA FLJ77414 complete cds, highly similar to Homo sapiens zinc finger protein 133 (clone pHZ-13) (ZNF133), mRNA.AK316386 - Homo sapiens cDNA, FLJ79285 complete cds, highly similar to Zinc finger protein 133.AK313525 - Homo sapiens cDNA, FLJ94083.AK294263 - Homo sapiens cDNA FLJ61226 complete cds, highly similar to Zinc finger protein 133.U09366 - Human zinc finger protein ZNF133.AK074502 - Homo sapiens cDNA FLJ90021 fis, clone HEMBA1000875.CU674910 - Synthetic construct Homo sapiens gateway clone IMAGE:100017758 5' read ZNF133 mRNA.KJ897770 - Synthetic construct Homo sapiens clone ccsbBroadEn_07164 ZNF133 gene, encodes complete protein.AB385083 - Synthetic construct DNA, clone: pF1KB5335, Homo sapiens ZNF133 gene for zinc finger protein 133, complete cds, without stop codon, in Flexi system.BT007310 - Homo sapiens zinc finger protein 133 (clone pHZ-13) mRNA, complete cds.AK123005 - Homo sapiens cDNA FLJ16801 fis, clone TESTI4004626, highly similar to Zinc finger protein 133.DQ598046 - Homo sapiens piRNA piR-36112, complete sequence.JD083969 - Sequence 64993 from Patent EP1572962.JD419161 - Sequence 400185 from Patent EP1572962.JD313001 - Sequence 294025 from Patent EP1572962.
Biochemical and Signaling Pathways
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001083330.1
exon count:
4 CDS single in 3' UTR:
no
RNA size:
2306
ORF size:
1962 CDS single in intron:
no
Alignment % ID:
99.96
txCdsPredict score:
4124.00 frame shift in genome:
no
% Coverage:
99.26
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.