Human Gene TCP11L1 (uc001mud.3)
Description: Homo sapiens t-complex 11, testis-specific-like 1 (TCP11L1), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr11:33,060,963-33,095,109 Size: 34,147 Total Exon Count: 10 Strand: +
Coding Region
Position: hg19 chr11:33,065,320-33,094,222 Size: 28,903 Coding Exon Count: 9
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: T11L1_HUMAN
DESCRIPTION: RecName: Full=T-complex protein 11-like protein 1;
SIMILARITY: Belongs to the TCP11 family.
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): TCP11L1
CDC HuGE Published Literature: TCP11L1
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR008862 - Tcp11
Pfam Domains: PF05794 - T-complex protein 11
ModBase Predicted Comparative 3D Structure on Q9NUJ3
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK090646 - Homo sapiens cDNA FLJ33327 fis, clone BNGH42009025, weakly similar to Homo sapiens t-complex 11(TCP11), mRNA.BC041696 - Homo sapiens t-complex 11 (mouse)-like 1, mRNA (cDNA clone MGC:48773 IMAGE:5756130), complete cds.JD193176 - Sequence 174200 from Patent EP1572962.JD065914 - Sequence 46938 from Patent EP1572962.BC030582 - Homo sapiens t-complex 11 (mouse)-like 1, mRNA (cDNA clone IMAGE:4830723), with apparent retained intron.AK002198 - Homo sapiens cDNA FLJ11336 fis, clone PLACE1010661, weakly similar to TESTIS-SPECIFIC PROTEIN PBS13.KJ899134 - Synthetic construct Homo sapiens clone ccsbBroadEn_08528 TCP11L1 gene, encodes complete protein.AK021448 - Homo sapiens cDNA FLJ11386 fis, clone HEMBA1000523, weakly similar to TESTIS-SPECIFIC PROTEIN PBS13.JD447997 - Sequence 429021 from Patent EP1572962.JD349433 - Sequence 330457 from Patent EP1572962.JD172293 - Sequence 153317 from Patent EP1572962.JD184132 - Sequence 165156 from Patent EP1572962.JD088493 - Sequence 69517 from Patent EP1572962.JD296098 - Sequence 277122 from Patent EP1572962.JD250237 - Sequence 231261 from Patent EP1572962.JD380869 - Sequence 361893 from Patent EP1572962.JD559614 - Sequence 540638 from Patent EP1572962.JD284049 - Sequence 265073 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: D3DR01, NM_018393, NP_060863, Q8IVX4, Q9NUJ3, T11L1_HUMANUCSC ID: uc001mud.3RefSeq Accession: NM_018393
Protein: Q9NUJ3
(aka T11L1_HUMAN)
CCDS: CCDS7882.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_018393.3
exon count:
10 CDS single in 3' UTR:
no
RNA size:
2817
ORF size:
1530 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
3070.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
910 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.