Human Gene DIAPH2 (uc004efu.4)
  Description: Homo sapiens diaphanous-related formin 2 (DIAPH2), transcript variant 156, mRNA.
RefSeq Summary (NM_006729): The product of this gene belongs to the diaphanous subfamily of the formin homology family of proteins. This gene may play a role in the development and normal function of the ovaries. Defects in this gene have been linked to premature ovarian failure 2. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chrX:95,939,662-96,855,597 Size: 915,936 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chrX:95,940,058-96,854,316 Size: 914,259 Coding Exon Count: 27 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:95,939,662-96,855,597)mRNA (may differ from genome)Protein (1101 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DIAP2_HUMAN
DESCRIPTION: RecName: Full=Protein diaphanous homolog 2; AltName: Full=Diaphanous-related formin-2; Short=DRF2;
FUNCTION: Could be involved in oogenesis. Involved in the regulation of endosome dynamics. Implicated in a novel signal transduction pathway, in which isoform 3 and CSK are sequentially activated by RHOD to regulate the motility of early endosomes through interactions with the actin cytoskeleton.
SUBUNIT: Isoform 3 interacts with RHOD in the GTP-bound form.
SUBCELLULAR LOCATION: Isoform 3: Cytoplasm, cytosol. Early endosome. Note=Isoform 3 is cytosolic but when coexpressed with RHOD, the 2 proteins colocalize to early endosomes.
TISSUE SPECIFICITY: Expressed in testis, ovary, small intestine, prostate, lung, liver, kidney and leukocytes.
DEVELOPMENTAL STAGE: Expressed from E16 in ovary and testis and during P6-P16 during differentiation of ovarian follicles.
DOMAIN: The DAD domain regulates activation via by an autoinhibitory interaction with the GBD/FH3 domain. This autoinhibition is released upon competitive binding of an activated GTPase. The release of DAD allows the FH2 domain to then nucleate and elongate nonbranched actin filaments (By similarity).
DISEASE: Defects in DIAPH2 are the cause of premature ovarian failure type 2A (POF2A) [MIM:300511]. An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol.
SIMILARITY: Belongs to the formin homology family. Diaphanous subfamily.
SIMILARITY: Contains 1 DAD (diaphanous autoregulatory) domain.
SIMILARITY: Contains 1 FH1 (formin homology 1) domain.
SIMILARITY: Contains 1 FH2 (formin homology 2) domain.
SIMILARITY: Contains 1 GBD/FH3 (Rho GTPase-binding/formin homology 3) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): DIAPH2
CDC HuGE Published Literature: DIAPH2

-  MalaCards Disease Associations
  MalaCards Gene Search: DIAPH2
Diseases sorted by gene-association score: premature ovarian failure 2a* (1069), blepharophimosis, epicanthus inversus, and ptosis, type 1 (5), premature ovarian failure 1 (1), nonsyndromic deafness (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.30 RPKM in Artery - Tibial
Total median expression: 154.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -179.10396-0.452 Picture PostScript Text
3' UTR -287.871281-0.225 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003104 - Actin-bd_FH2/DRF_autoreg
IPR016024 - ARM-type_fold
IPR014767 - Diaphanous_autoregulatory
IPR010465 - Drf_DAD
IPR010472 - Drf_FH3
IPR010473 - Drf_GTPase-bd
IPR015425 - FH2_actin-bd
IPR014768 - GTPase-bd/formin_homology_3

Pfam Domains:
PF02181 - Formin Homology 2 Domain
PF06345 - DRF Autoregulatory Domain
PF06367 - Diaphanous FH3 Domain
PF06371 - Diaphanous GTPase-binding Domain

SCOP Domains:
48452 - TPR-like
101447 - Formin homology 2 domain (FH2 domain)

ModBase Predicted Comparative 3D Structure on O60879
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005102 receptor binding
GO:0017048 Rho GTPase binding

Biological Process:
GO:0007015 actin filament organization
GO:0007275 multicellular organism development
GO:0007292 female gamete generation
GO:0016043 cellular component organization
GO:0030036 actin cytoskeleton organization
GO:0030154 cell differentiation
GO:0048477 oogenesis

Cellular Component:
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005769 early endosome
GO:0005783 endoplasmic reticulum
GO:0005829 cytosol
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  KX533476 - Homo sapiens Diaphanous related formin 2 (DIAPH2) mRNA, complete cds.
Y15908 - Homo sapiens mRNA for dia-12c protein.
Y15909 - Homo sapiens mRNA for dia-156 protein.
AK291272 - Homo sapiens cDNA FLJ75405 complete cds, highly similar to Homo sapiens diaphanous homolog 2 (Drosophila) (DIAPH2), transcript variant 12C, mRNA.
BC117414 - Homo sapiens diaphanous homolog 2 (Drosophila), mRNA (cDNA clone MGC:151023 IMAGE:40125965), complete cds.
BC143838 - Homo sapiens diaphanous homolog 2 (Drosophila), mRNA (cDNA clone MGC:177370 IMAGE:9052353), complete cds.
KJ901384 - Synthetic construct Homo sapiens clone ccsbBroadEn_10778 DIAPH2 gene, encodes complete protein.
AB384711 - Synthetic construct DNA, clone: pF1KB1986, Homo sapiens DIAPH2 gene for diaphanous homolog 2 protein, complete cds, without stop codon, in Flexi system.
AK002029 - Homo sapiens cDNA FLJ11167 fis, clone PLACE1007257, highly similar to Protein diaphanous homolog 2.
JD406005 - Sequence 387029 from Patent EP1572962.
JD406006 - Sequence 387030 from Patent EP1572962.
JD257232 - Sequence 238256 from Patent EP1572962.
JD474938 - Sequence 455962 from Patent EP1572962.
JD072918 - Sequence 53942 from Patent EP1572962.
JD200881 - Sequence 181905 from Patent EP1572962.
JD222458 - Sequence 203482 from Patent EP1572962.
JD285566 - Sequence 266590 from Patent EP1572962.
JD438292 - Sequence 419316 from Patent EP1572962.
JD540657 - Sequence 521681 from Patent EP1572962.
JD044134 - Sequence 25158 from Patent EP1572962.
JD363552 - Sequence 344576 from Patent EP1572962.
JD260045 - Sequence 241069 from Patent EP1572962.
JD350133 - Sequence 331157 from Patent EP1572962.
JD523867 - Sequence 504891 from Patent EP1572962.
JD553025 - Sequence 534049 from Patent EP1572962.
JD196898 - Sequence 177922 from Patent EP1572962.
JD449531 - Sequence 430555 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04810 - Regulation of actin cytoskeleton

Reactome (by CSHL, EBI, and GO)

Protein O60879 (Reactome details) participates in the following event(s):

R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-195258 RHO GTPase Effectors
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction
R-HSA-5666088 RHOD:GTP recruits DAIPH2-3 to endosomes
R-HSA-5666104 RHOD:GTP:DIAPH2-3 recruits SRC-1 to endosomes
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-195258 RHO GTPase Effectors
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A6NG19, DIA, DIAP2_HUMAN, NM_006729, NP_006720, O60878, O60879, Q8WX06, Q8WX48, Q9UJL2
UCSC ID: uc004efu.4
RefSeq Accession: NM_006729
Protein: O60879 (aka DIAP2_HUMAN or DIA2_HUMAN)
CCDS: CCDS14467.1, CCDS14468.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_006729.4
exon count: 27CDS single in 3' UTR: no RNA size: 4983
ORF size: 3306CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 6804.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 2
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.