UCSC Genome Bioinformatics
Genomes- Blat- Tables- Gene Sorter- PCR- VisiGene- Session- FAQ- Help
Genome Browser
ENCODE
Neandertal
Blat
Table Browser
Gene Sorter
In Silico PCR
Genome Graphs
Galaxy
VisiGene
Utilities
Downloads
Release Log
Custom Tracks
Cancer Browser
Microbial Genomes
Mirrors
Training
Credits
Publications
Cite Us
Licenses
Jobs
Staff
Contact Us

  About the UCSC Genome Bioinformatics Site

Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to the ENCODE and Neandertal projects.

We encourage you to explore these sequences with our tools. The Genome Browser zooms and scrolls over chromosomes, showing the work of annotators worldwide. The Gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways. Blat quickly maps your sequence to the genome. The Table Browser provides convenient access to the underlying database. VisiGene lets you browse through a large collection of in situ mouse and frog images to examine expression patterns. Genome Graphs allows you to upload and display genome-wide data sets.

The UCSC Genome Browser is developed and maintained by the Genome Bioinformatics Group, a cross-departmental team within the Center for Biomolecular Science and Engineering (CBSE) at the University of California Santa Cruz (UCSC). If you have feedback or questions concerning the tools or data on this website, feel free to contact us on our public mailing list.


  NewsFollow GenomeBrowser on Twitter

To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the genome-announce mailing list.


15 April 2014 - New Minke Whale (balAcu1) Assembly Now Available in the Genome Browser

A Genome Browser is now available for the minke whale (Balaenoptera acutorostrata scammoni) assembly released October 2013 by the Korea Ocean Research & Development Institute (KORDI version BalAcu1.0, UCSC version balAcu1). For more information and statistics about this assembly, see the NCBI assembly record for BalAcu1.0. There are 10,776 scaffolds with a total size of 2,431,687,698 bases.

Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser FTP server or the Downloads page. Please observe the conditions for use when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to this release.


11 April 2014 - New UCSC Genes Track Released for GRCm38/mm10

We're happy to announce the release of an updated UCSC Genes track for the GRCm38/mm10 mouse Genome Browser. The new release has 61,642 total transcripts, compared with 59,121 in the previous version. The total number of canonical genes has increased from 31,469 to 32,408. Comparing the new gene set with the previous version:

  • 54,714 transcripts did not change between versions.
  • 19 transcripts were not carried forward to the new version.
  • 3,866 transcripts are "compatible" with those in the previous set, meaning that the two transcripts show consistent splicing. In most cases, the old and new transcripts differ in the lengths of their UTRs.
  • 522 transcripts overlap with those in the previous set, but do not show consistent splicing (i.e., they contain overlapping introns with differing splice sites).

More details about the new UCSC Genes track can be found on the UCSC Genes track description page.


06 March 2014 - The new GRCh38 Human Genome Browser is here! In the final days of 2013, the Genome Reference Consortium (GRC) released the eagerly awaited GRCh38 human genome assembly, the first major revision of the human genome in more than four years. Read more.

04 March 2014 - Introducing Genome Browser highlight feature: We are excited to announce a new highlight feature in the UCSC Genome Browser. Using drag-and-select, you can now highlight a region or gene of interest. Read more.


  Conditions of Use

The Genome Browser software, sequence and annotation data are freely available for use with these conditions. A license is required for commercial use of the software. For assistance with questions or problems regarding the UCSC Genome Browser software, database, genome assemblies, or release cycles, click here.

Program-driven use of this software is limited to a maximum of one hit every 15 seconds and no more than 5,000 hits per day.

The UCSC Genome Browser was created by the Genome Bioinformatics Group of UC Santa Cruz. Software Copyright (c) The Regents of the University of California. All rights reserved.